Getting the data

To get the data download and unzip this tarball:

Change dir to the root and download:

cd ~
wget https://www.chg.ox.ac.uk/~gav/projects/oxford_statgen_summer_school/day_one_afternoon.tgz

Extract:

tar -xzf day_one_afternoon.tgz

You should now have a folder called variant_calling_and_imputation. Let's delete the tarball and change into it:

rm day_one_afternoon.tgz
cd variant_calling_and_imputation

When you're ready, head on to the practical itself.