Getting the data

You'll also need some data - to get this, download the tarball from this folder

For example using curl:

curl -O https://www.chg.ox.ac.uk/~gav/projects/chg-training-resources/data/sequence_data_analysis/introduction_to_next_generation_sequencing_data_analysis/sequence_data_analysis.tgz

This will take a minute or so to download. Extract it :

tar -xzf sequence_data_analysis.tgz

You should now have a folder called sequence_data_analysis. For the tutorial, delete the tarball and then change into that directory:

rm sequence_data_analysis.tgz
cd sequence_data_analysis

Now you're ready to start.