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A sequence data pipelining challenge!

Welcome! Go to the introduction to get started.

Note

This tutorial is for people with some background in bioinformatics and next-generation sequencing. It focusses on building a robust pipeline to process NGS reads using snakemake. To complete it you will need to have at least some experience working with the UNIX command-line, and basic knowledge of the the steps needed to process NGS data.

For background on NGS data and how to process it, please see the introduction to NGS tutorial.

Contributors​

  • Gavin Band
  • Helen Lockstone
  • Annie Forster
  • Matthieu Miossec
  • Srinivasa Rao